The trouble with that list is that it's area-wide, so it doesn't make a whole lot of sense to put Guttenberg, which is a few city blocks in size, on the same list with NYC or Boston.
For transportation purposes, you want to look at more specific levels of density along the corridor of interest. Block-level, blockgroup-level or tract-level (census terms).
I also prefer dwelling units per net acre. Why? Because measuring the number of dwelling units tells you how many people can live comfortably in an area. A higher number of dwelling units per acre usually corresponds to less overcrowding because it is easier to get an apartment, so it is less likely that people are forced to live together unsafely. Net acre means per acre of land zoned for residential use. So this excludes roadways, parks, commercial and industrial zones. I think this is important because it is the land where people live that primarily generates customers for the transit service, not the adjacent park (though of course, it does get users too).
Under this lens, the most densely populated areas of Boston are the Fenway (100-200 dwelling units / net acre), north side Beacon Hill (100-200 du/na) the North End (90-180 du/na), Back Bay Comm Ave (75-150 du/na), Allston/Brighton Comm Ave (60-120 du/na), Southie W. Broadway (110 du/na), and the South End (50-200 du/na).
Most of Dorchester and Roxbury falls in the 10-40 du/na range, as does Brighton Center. Oak Square is 10-20 du/na as is most of JP. Typically, younger suburban towns are under 10-12 du/na, and 10-20 du/na is considered semi-suburban or borderline.
Of course that is only one axis to look at, and there's a lot of different history in the various neighborhoods and patterns of usage and growth to account for too. But fundamentally, you want to build transit where the people are (or where they will be) and Comm Ave has a lot more people living there than the Cambridge/Washington St corridor.