More of a crazy transit pitch but this seems like this points to tram-trains on the GLX. Tram from downtown to Union Sq. then beyond Union Sq. run on CR tracks or in the ROW to Waltham or Brandeis at higher speeds with more spaced stops. Same for Medford/Tufts to Anderson RTC.
Yeah this is kinda redundant with 15min regional rail and would require a bit of an infrastructure upgrade and more new rolling stock but I think it would work well for the areas served by these inner portions of these lines. It would answer the urban rail question for the Lowell Line at a possibly cheaper cost and could allow faster travel times for the outer Fitchburg Line by bypassing Waverly and Belmont on some trips. That might make achieving 15min regional rail to outer stations easier.
I modeled this idea off the
Karlsruhe S-Bahn